The NGI believes that the best science comes from collaborations.
This page serves as a hub for all of the data available through the Neurogenomics and Informatics (NGI) Center. This data is available to NGI affiliate members.
Genotyping
| Type | Description | Sample Size | Request Data |
|---|---|---|---|
| GWAS | Unique individuals genotyped and used for GWAS | 6701 | NG00030 NG00087 Knight-ADRC |
Sequencing Data
| Type | Description | Sample Size | Request Data |
|---|---|---|---|
| Whole Exome Sequencing | Whole Exome sequencing of AD cases and controls | 1051 | NG00067 |
| Whole Genome Sequencing | Whole Genome sequencing of AD cases and controls | 1391 | NIAGADS |
RNA Sequencing
| Type | Description | Sample Size | Request Data |
|---|---|---|---|
| Brain Bulk RNA-Seq | Ribo-depleted RNA. 150×2 paired reads. 80 Million reads | 450 | Browser coming soon NG00083 |
| Brain snRNA-Seq | 10X 3′ V3 non sorted | 44 | NG00108 |
| Blood Bulk RNA-Seq | Ribo-depleted RNA. 150×2 paired reads. 100M reads | 2942 | AMP-PD PDBP Transcript Level Browser |
| Blood Bulk RNA-Seq | Ribo-depleted RNA. 150×2 paired reads. 100M reads | 3232 | AMP-PD PPMI Transcript Level Browser |
Proteomics
| Type | Description | Sample Size | Request Data |
|---|---|---|---|
| Brain SOMAScan 1.3k | Brain Proteomic data of AD cases and controls | 433 | pQTL Browser Protein Level Browser NIAGADS |
| CSF SOMAScan 1.3k | CSF Proteomic data of AD cases and controls | 1270 | pQTL Browser Protein Level Browser NIAGADS |
| Plasma SOMAScan 1.3k | Plasma Proteomic data of AD cases and controls | 633 | pQTL Browser Protein Level Browser NIAGADS |
| CSF SOMAScan 7k | CSF Proteomic data of AD cases and controls | 2963 | Coming Soon |
| Plasma SOMAScan 7k | Plasma Proteomic data of COVID-19 cases and controls | 482 | Protein Level Browser |
Metabolomics
| Type | Description | Sample Size | Request Data |
|---|---|---|---|
| Brain | Metabolon HD4 data of AD cases and controls | 454 | NIAGADS |
| CSF | Metabolon HD4 data of AD cases and controls | 2963 | Coming Soon |
| Plasma | Metabolon HD4 data of AD cases and controls | 3000 | Coming soon |
Methylation
| Type | Description | Sample Size | Request Data |
|---|---|---|---|
| Brain | Illumina 880 Epic Array | 454 | NIAGADS |
| Blood | Illumina 880 Epic Array | 3,000 | Coming Soon |